
Microbial Clinical Atlas
Microbiome Knowledge Base
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Free
About
Microbial Clinical Atlas (MCA) is a free, offline clinical microbiology reference for clinicians and researchers. Browse curated taxon passports covering taxonomy, biology, ecology, metabolites, clinical associations, and evidence-graded literature.
A. PASSPORTS
• Search and browse 60+ curated microbial taxon passports
• Detailed clinical profiles: pathobiont status, AMR highlights, virulence factors, bloom triggers, and more
• Evidence-graded clinical associations linked to PubMed
• Bookmark taxa for quick access
B. ADVANCED SEARCH
• Search KEGG pathways, taxa, and diseases from a unified search bar
• Explore pathway–taxon–disease relationships with cross-navigation
• View linked compounds, drugs, and co-occurring taxa
C. ON-DEVICE AI EXTRACTOR (OPTIONAL)
• Scan papers you find interesting and suggest them to our curation team
• Runs entirely on your device with Gemma 4 by Google
• Nothing leaves your phone unless you tap Send in Mail
• Requires an iPhone 15 Pro or newer
D. PRIVACY-FIRST
• All data is stored offline on your device
• No account required, no tracking, no analytics
Developed and maintained by the Bioinformatics Hub (https://TheBioHub.ca/).
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What's New in Microbial Clinical Atlas
1.2
May 14, 2026
We're excited to introduce the new on-device AI Extractor — scan papers you find interesting and contribute to MCA. It runs entirely on your phone with Gemma 4 by Google, so nothing leaves your device unless you choose to share. Requires iPhone 15 Pro or newer. Thank you for being part of MCA!
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