Comparison

MarginNote 3 vs Highlights

Price, ratings, monetisation and update history for both apps, side by side — with what reviewers say about each.

Head to head
About

MarginNote 3

This app redefines studying by integrating e-reading with powerful annotation, mind mapping, and flashcard tools. Organize knowledge, connect ideas with hashtags, and enhance memory retention through spaced repetition. It offers a seamless workflow across multiple documents and devices.

Highlights
  • Integrated PDF/EPUB reader
  • Advanced annotation tools
  • Mind mapping and outline organization
  • Flashcard creation and Anki export
  • Multi-document support
  • Handwriting and Apple Pencil support
  • OCR for scanned PDFs
Features
Read full description

MarginNote 3, all brand new e-reader to better study and digest your books Integrating powerful tools for book annotation, mindmapping, flashcards and more, to build up your reading notes as never before. ============================================ Welcome to MarginNote. This is a highly powerful reading and study software and is applicable to Mac, iPad, and iPhone. By integrating the PDF/EPUB reader and multiple powerful study tools, MarginNote will enable learners to reorganize and connect knowledge from different aspects, then memorize and grasp it accordingly. Whatever your profession, such as student, educator, researcher, lawyer, or life-long learner, you may annotate and take notes through MarginNote, organize notes via Mindmap and Outline, connect knowledge horizontally via Hashtag and raise memory effect via the Flashcards. You will discover what MarginNote does is not to simply integrate these tools. Instead, it combines them deeply and skillfully, which makes it easier for users to toggle between different tools. What's New in MarginNote 3 * New and Clean UI Completely redesigned. * Improved performance and Running more smoothly * Support both Document Reading mode & Study Reading mode. * Excerpts & Note-taking * Enhanced Handwriting & apple-pencil support. * Support TextBox on PDF. * Support direct text-typing & sketching when editing note cards. * Support Auto OCR when excerpting on scanned PDFs. * Emphasis & Cloze * Support direct emphasis in powerful Emphasis mode both on PDF or Outline. * Support auto convert emphasis to Cloze in CardDeck. * Support creating Image-Occlusion flashcards. * Multi-Documents * Support both document tabs & split views to switch between documents. * MindMap * Auto grouping new excerpts by Document Table of Contents. * Support new brach display mode: Framework. * Swipe/Drag gestures to slide in/out Outline & Documents in Study mode. * Enhanced grouped cut/paste, drag to merge,.. etc. * Outline * Improved search and displaying keywords in results. * Improved styles. * CardDeck: * View Flashcards in MindMap mode and Document mode. * Enhanced Anki Export: Card styles, Image occlusions, Cloze * Enhanced Research web browser. * iCloud Sync * Fixed several design issue in previous versions. * More stable & improved performance. * Categories * Separate categories for Document, Study and Review. * Trash * Recover data from Trash and make data more safe. * Trial * 14-days free trial. MarginNote 2 features: Reading: - Support PDF and EPUB format; Annotating and NoteTaking: - Support text highlight and rectangular highlight; - Add notes directly at the page margin; the note editing area will not overlap with the book content at all; - Text, voice, picture, sketching and many other forms of comments in note; - Add hashtags to notes to facilitate the connection of notes; Outline and Mindmap: - Outline and Mindmap in one view; - Create Outline tree by swipe gestures; - Multi-selection editing such as group, merge, clone, etc; - Quick searching and filtering according to colors, hashtags, books. Flashcard: - Highlights and notes can be automatically turned into flashcards for review; - Spaced repetition adopting the Anki-based algorithm; - Switch to the linking book page at any time; iPad Pro & Apple pencil: - Split View of multiple tasks; - High-precision drawing by Apple pencil; - Fine tuned for Apple pencil; - Keyboard shortcuts; Import, Export and Sync: - Import webpages and notes from Evernote; - Export flashcards to Anki; - Export Outline to OmniOutliner; - Export Mindmap to iThoughts or MindManager; - Export to Evernote; - Export all the margin notes, MindManager, Outline and Pages to a printable PDF; - Sync books & notes with iCloud; Terms of Use: https://www.marginnote.com/press/marginnote-3-term-of-use Privacy Policy: https://www.iubenda.com/privacy-policy/92678020

About

Highlights

This app is a fast and lightweight PDF reader designed for research. It allows users to read, highlight, and annotate documents, and then extract this information into organized notes. Advanced features include table data extraction, text recognition, and smart copying of annotations into various formats.

Highlights
  • Read and browse PDF documents
  • Highlight, underline, and strikethrough text
  • Add comments and sticky notes
  • Extract annotations into organized notes
  • Convert table data and recognize text
  • Smart copy annotations to various formats (CSV, BibTex)
  • Lookup citation metadata and DOI links
Features
Read full description

"... an app that students, academics, and anyone who does substantial amounts of PDF-based research should try" - Macstories.net "It’s the novel approach to PDF annotation that makes this app a cut above the rest"- TapSmart.com *** "App of the Day" - App Store, US *** USE HIGHLIGHTS FOR FREE Highlights is a fast and lightweight PDF reader (under 10MB) packed with features to help you do your best research. Free users have access to standard PDF reader features including document browsing, reading and annotating. There are NO ADS, time limits or tracking. READ PDF DOCUMENTS • Open PDF documents from anywhere • Browse files using the familiar document browser • Open PDFs in Single Page or Two Page scroll mode • Double tap to Smart Zoom in on a paragraph or figure • Scrub smoothly to the desired page • Search the entire document in an instant • Navigate using any connected keyboard or mouse STORE YOUR FILES WHERE YOU WANT • Full support for "Open In Place" lets you make edits to the file where it is • Access your files from iCloud Drive, Dropbox, Google Drive, OneDrive or Box using the document browser • Or keep them privately on device only HIGHLIGHT AND ANNOTATE FASTER • Select text with your finger, Apple Pencil or mouse pointer • Highlight, underline, strikethrough text and make image selections • Add comments to annotations or as individual sticky notes • Annotate with fewer taps using context aware popovers • Default annotation colors prevents you from having to repeatedly setting the color for the same type of annotation every time TURN ANNOTATIONS INTO NOTES • As you markup text and images the contents are extracted and sorted into notes • Customize the formatting and contents of your notes • Sort the annotations chronologically or create your own color coding EXTRACT TABLE DATA AND RECOGNIZE TEXT • Convert images containing text or tables to actual text and tables using machine learning - letting you get to the underlying data with a single tap SMART COPY Copy annotations to the desired format with one tap: • Text markup as text • Image selections as images • Tables as CSV • Citations as BibTex LOOKUP CITATIONS • Highlights will fetch DOI-links and metadata • Markup any reference and tap the link icon to look it up • If you have read the work already or have it in your reference manager library, Highlights will link you to it EXPORT ANYWHERE • Save or share your notes as portable files: Markdown, TextBundle, HTML, WebArchive or PDF • Share them to your favorite notes app: Apple Notes, Bear, Craft, Evernote, DEVONThink, Keep It, MindNode, Notion, Obsidian, Roam Research or Ulysses • Or send them to a colleague via mail. It's your notes, you decide where they go MUCH MORE • Dark mode • Multi-window support on iPadOS • Keyboard shortcuts and navigation • Support for system Copy and Undo gestures • Alternative app icons • Custom accent colors • Apple Pencil double-tap gestures • Power annotation tools For a full list of features see: highlightsapp.net/features HIGHLIGHTS PRO The Highlights Pro subscription unlocks advanced features on your iPhone, iPad and Mac: • Export options for other apps and easily editable formats • Extract information using table and text recognition • Customize accent colors and alternative app icons • Power annotation tools • Citation lookups • Smart Copy Highlights Pro includes a 14-day free trial. You can cancel your subscription at any time. The subscription will automatically renew unless auto-renew is turned off within 24-hour prior to the end of of the current period. Payments will be charged to your iTunes account and your account will be charged within 24-hours prior to the end of the current period. Any unused portion of a free trial period will be forfeited when you purchase a subscription. For more information about Highlights Pro: highlightsapp.net/pro Privacy Policy: highlightsapp.net/privacy Terms of Use: highlightsapp.net/terms

Screenshots

MarginNote 34 screens
Highlights4 screens

Verdict

The call

The clearest difference is review sentiment: MarginNote 3 at 75% against Highlights's 53%. MarginNote 3 also leads on rating (4.7 vs 4.5) and ratings volume (5K vs 1.6K). Highlights's advantage is update cadence (fortnightly vs every 6 weeks). On price, ads, in-app purchases and monetization model there is nothing between them.

Scored on Price · Rating · Positive reviews · Number of ratings · Update frequency · Ads · In-app purchases · Monetization · Best chart rank · Devices · Requires iOS

CostPrice · In-app purchases · Ads · Monetization

Both are free to download. MarginNote 3 sells 5 in-app purchases, starting at $0.99 per month and Highlights sells 3 in-app purchases, starting at $4.99 per month. Whichever you choose, the download price is not the number that matters.

ReceptionRating · Positive reviews · Number of ratings

MarginNote 3 holds the better App Store score, 4.7 against 4.5. Both are backed by a comparable volume of ratings — 5K and 1.6K respectively. Written reviews point the same way: 75% of MarginNote 3's written reviews are positive against 53% of Highlights's.

UpkeepUpdate frequency

MarginNote 3 ships an update every 6 weeks, Highlights fortnightly. The most recent releases landed on September 24, 2026 and September 22, 2026 respectively.

Scorecard5 real differences · 5 level
MarginNote 3 versus Highlights: the parameters behind the verdict, then further details
ParameterMarginNote 3Highlights
PriceFreeFree
Rating4.7 (5K ratings) — better4.5 (1.6K ratings)
Positive reviews74.6% of reviews — better53.3% of reviews
Number of ratings5K — better1.6K
Update frequencyEvery 6 weeksFortnightly — better
AdsNoNo
In-app purchasesYesYes
MonetizationFree with in-app purchasesFreemium
DevicesiPhone, iPad, iPodiPhone, iPad, iPod, Mac — better
Requires iOS11.2 — better15.0
Further details — not scored
Size392 MB37 MB
Age rating17+4+
DeveloperBeijing Yunsi Software Technology Co., LtdJonas Myren Ribe

Customer experience

MarginNote 3

All ratings5,043 ratings
Positive93.2%
Neutral2.6%
Negative4.2%
Written reviews983 reviews
Positive74.6%
Neutral11.5%
Negative13.9%

Highlights

All ratings1,610 ratings
Positive88.2%
Neutral3.7%
Negative8.1%
Written reviews465 reviews
Positive53.3%
Neutral15.3%
Negative31.4%

User reviews

MarginNote 3

From 5K App Store ratings

What we love

  • 🚀 Powerful and efficient for studying and research
  • 👍 Excellent mind mapping and note-taking features
  • 💡 Unique and innovative functionality like video annotation
  • 🚀 Handles large volumes of documents and notes well
  • 👍 Useful for organizing and synthesizing information from multiple sources

Room to improve

  • 🐛 Frequent crashes and stability issues
  • 👎 Steep learning curve and lack of comprehensive documentation
  • 👎 Unreliable cloud syncing between devices
  • 👎 Cluttered and unintuitive user interface in some areas
  • 🐛 Bugs and glitches with certain features like handwriting and OCR

Highlights

From 1.6K App Store ratings

What we love

  • 🚀 Great for highlighting and annotating PDFs
  • 🔍 Effective for research and note-taking
  • 📚 Useful for academic and professional work
  • 👍 Clean and intuitive user interface
  • 🔗 Good integration with other apps and cloud storage

Room to improve

  • 💰 Subscription model is too expensive
  • 🐛 Frequent crashes and bugs
  • 🔍 Limited search functionality
  • 🔒 Lack of customization options
  • 🔧 Poor customer support and unresponsive developers

Bugs and requests

MarginNote 3

Reported bugs

5 issues
  • Syncing issues causing data loss across devices
  • Crashes and freezes when working with large documents
  • Inconsistent behavior with highlighting, erasing, and text formatting
  • OCR not functioning reliably for non-Latin scripts
  • Difficulty managing and organizing large document libraries

Requested features

5 requests
  • Improved export options and ability to share projects
  • Better integration with other productivity apps like Anki
  • More customization options for mind maps and annotations
  • Smoother handwriting experience and better palm rejection
  • Support for more file formats like PowerPoint

Highlights

Reported bugs

5 issues
  • Highlights and annotations randomly disappearing
  • Text selection issues, especially with footnotes
  • Compatibility problems with certain PDF files
  • Syncing issues across devices
  • Export functionality not working as expected

Requested features

5 requests
  • Add handwriting and freeform annotation support
  • Implement a table of contents or bookmarking feature
  • Allow editing of notes directly in the app
  • Provide a one-time purchase option instead of subscription
  • Improve search capabilities with visual results and navigation

In-app purchases

5 purchases

MarginNote 3

Subscriptions2
  • OCR Pro (Monthly)3 Days trial$0.991 Month
  • OCR Pro (Annually)3 Days trial$9.491 Year
One-time3
  • 14 days Free TrialFree
  • Unlock Full$12.99
  • Upgrade to Full$12.99
3 purchases

Highlights

Subscriptions3
  • Highlights Pro: Monthly$4.991 Month
  • Highlights Pro14 Days trial$29.991 Year
  • Highlights Pro: Legacy Upgrade1 Year trial$29.991 Year

Questions

Is MarginNote 3 free?
MarginNote 3 is free to download, with in-app purchases available.
Is Highlights free?
Highlights is free to download, with in-app purchases available.
Which has better reviews, MarginNote 3 or Highlights?
MarginNote 3 is rated higher. MarginNote 3 averages 4.7 out of 5 from 5K ratings, while Highlights averages 4.5 from 1.6K ratings.
Do MarginNote 3 or Highlights have ads?
Neither MarginNote 3 nor Highlights shows ads.
Which is updated more often, MarginNote 3 or Highlights?
MarginNote 3 ships an update every 6 weeks, and Highlights fortnightly. Most recently, MarginNote 3 was updated on September 24, 2026 and Highlights on September 22, 2026.

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