MolDock vs MolViewApp

DockIt brings the power of AutoDock Vina to your phone and tablet. Whether you're a researcher, student, or just curious about how drugs bind to proteins, DockIt makes molecular docking accessible to everyone. WHAT IS MOLECULAR DOCKING? Molecular docking predicts how a small molecule (ligand) binds to a protein target. It's a cornerstone of drug discovery — helping researchers identify promising drug candidates before costly lab experiments. FEATURES • Search Proteins — Browse 200,000+ protein structures from RCSB Protein Data Bank. View them in an interactive 3D viewer with cartoon, stick, and surface rendering modes. • Search Molecules — Find any of 100M+ compounds from PubChem by name. See molecular formula, weight, SMILES notation, and 2D structure images. • Run Docking Jobs — Configure AutoDock Vina parameters, submit to our cloud server, and get results with binding affinities for up to 9 docked poses. • 3D Visualization — Explore docked protein-ligand complexes in a beautiful interactive viewer with rainbow spectrum protein rendering and green ligand overlay. • 16 Famous Examples — Instantly try iconic drug-protein pairs like Imatinib + BCR-ABL (cancer), Aspirin + COX-2 (pain), Caffeine + Adenosine receptor (neuroscience), Remdesivir + RdRp (COVID-19), and more across 7 categories. • Live Progress — Watch your docking job in real time with step-by-step status updates, ETA countdown, and a full log of every stage. • Download Results — Export docked poses in PDB or PDBQT format for use in PyMOL, Chimera, or other molecular visualization tools. • Tablet Optimized — Responsive layout with 2-column grids and centered content on iPad and large screens. HOW IT WORKS 1. Pick a protein from RCSB PDB (or choose a famous example) 2. The app prepares the protein — removes water, adds charges 3. Pick a ligand from PubChem 4. Configure exhaustiveness and submit 5. Watch live progress as AutoDock Vina runs on our server 6. View 3D results and download docked structures POWERED BY SCIENCE DockIt uses AutoDock Vina, one of the most cited molecular docking programs in computational chemistry. Data comes from RCSB Protein Data Bank (200K+ experimentally determined structures) and PubChem (100M+ chemical compounds). Built by John Wonmo Seong at Seoul National University, with special thanks to Professor Juyong Lee at the Computational Drug Discovery Lab. For research inquiries and feedback: john@orchestrsim.com MOLDOCK PRO MolDock Pro is an optional auto-renewing subscription (monthly or yearly) that raises your account's limits: 300 dockings a day, virtual screening of up to 500 ligands per batch, private jobs, REST API keys and results kept until you delete them. Payment is charged to your Apple ID account at confirmation of purchase. The subscription renews automatically unless cancelled at least 24 hours before the end of the current period. Manage or cancel in your App Store account settings. Terms of Use (EULA): https://www.apple.com/legal/internet-services/itunes/dev/stdeula/ Privacy Policy: https://wonmor.github.io/LCBC-Dock/privacy.html

MolViewApp is an iPad molecular structure viewer built on Mol*. Load PDB files locally or by PDB ID and explore proteins with cartoon, surface, stick, and ball-and-stick representations. Features: - Load multiple structures; per-structure visibility from the Objects panel - Surface electrostatic potential map (screened-Coulomb / APBS-style) - Superposition and sequence-independent structural alignment - Secondary structure (DSSP) coloring - Morphing between conformations - Command-line interface and built-in manual All computation runs on-device. No account, no data collection, no tracking.