Visualize and interact with complex 3D molecular structures. Explore atomic arrangements, chemical bonds, and create custom compounds. Ideal for students, educators, and chemistry enthusiasts.





249+ iOS apps curated and reviewed
With an average user rating of 3.6โ , the molecular model simulator category is one of the App Store's strongest. Browse all 249+ apps we track, sorted so the most loved ones surface first.
| # | App | Price | Rating | Ads | In-App Purchases | Updated |
|---|---|---|---|---|---|---|
| 1 | Free | โ | Yes | Yes | Aug 2026 | |
| 2 | Free | 3.6โ (166) | No | No | Aug 2026 | |
| 3 | Free | โ | No | No | Aug 2026 | |
| 4 | Free | 5.0โ (1) | No | No | May 2026 | |
| 5 | Free | โ | No | No | May 2026 | |
| 6 | Free | โ | No | Yes | Jul 2026 | |
| 7 | Free | โ | No | No | Jul 2026 | |
| 8 | Free | 3.9โ (52) | No | No | Jul 2026 |





Visualize and interact with complex 3D molecular structures. Explore atomic arrangements, chemical bonds, and create custom compounds. Ideal for students, educators, and chemistry enthusiasts.





Explore and interact with 3D molecular models on your device. Rotate, zoom, and pan structures using intuitive touch gestures. Visualize molecules in different modes and load custom structures from various sources.





This application enables users to conduct molecular dynamics simulations. Explore the behavior of Lennard-Jones fluids under different environmental conditions. It's a free tool for scientific exploration.


Explore animated 3D molecules like ATP Synthase using augmented reality. Point your device's camera at a flat surface, select a molecule, and place it in your environment for interactive viewing.




Explore molecular geometry through augmented reality. Visualize complex chemical structures and understand difficult concepts without physical models. Request new molecules to be added to the learning experience.


Create and optimize 3D molecular models. This free software allows users to design molecules and refine their geometry simultaneously. A more advanced desktop version is also available.


Explore and interact with 3D molecular models in an immersive chemistry learning experience. Scale, rotate, and move models while discovering properties and fun facts. Ideal for students and educators.


Visualize the 3D structures of molecules using data from PubChem and Protein Data Bank. Explore molecules in various viewing modes and download an extensive library of compounds.










Explore complex ecological and epidemiological models through interactive simulations. This tool introduces cellular automaton models and allows hands-on manipulation of parameters to visualize spatial dynamics. It's designed for educational outreach and scientific exploration.




This educational tool simulates neuron receptive fields and PSTH output signals, addressing limitations in existing models. It's designed for students, teachers, and scientists in neuroscience and related fields.





