WebMO Molecule Editor vs PDB Viewer

WebMO allows users to build and view molecules in 3-D, visualize orbitals and symmetry elements, lookup chemical information and properties from external databases, and access state-of-the-art computational chemistry programs. WebMO is recommended for students and faculty in high school, college, and graduate school who desire mobile access to molecular structures, information, and calculations. WebMO capabilities include: - Build molecules by drawing atoms and bonds in a 3-D molecular editor, or by speaking the name (e.g., “aspirin”) - Optimize structures using VSEPR theory or molecular mechanics - View Huckel molecular orbitals, electron density, and electrostatic potential - View molecular vibrations - View point group and symmetry elements of molecules - Lookup basic molecular information, including IUPAC and common names, stoichiometry, molar mass - Lookup chemical data from PubChem and ChemSpider - Lookup experimental and predicted molecular properties from external databases (NIST, Sigma-Aldrich) - Lookup IR, UV-VIS, NMR, and mass spectra from external databases (NIST, SDBS) - Capture high-resolution molecular images - Save and recall molecular structures locally - Export and import structures via email WebMO is also a front-end to WebMO servers (version 14 and higher): - Supports Gaussian, GAMESS, Molpro, MOPAC, NWChem, ORCA, PQS, PSI, Quantum Espresso, VASP, Q-Chem, and Tinker computational chemistry programs - Submit, monitor, and view calculations - View formatted tabular data extracted from output files, as well as raw output - Visualize geometry, partial charges, dipole moment, normal vibrational modes, molecular orbitals, and NMR/IR/UV-VIS spectra

PDB Viewer turns your phone into a molecular microscope. Search the entire Protein Data Bank and over 200 million AlphaFold predictions, then explore any protein, virus, drug, or DNA structure in interactive 3D — free, with no account, no ads, and no sign-up. WHERE THE MOLECULES COME FROM • RCSB Protein Data Bank — 200,000+ experimentally determined structures • AlphaFold — 200M+ AI-predicted protein models • SWISS-MODEL — template-based homology models • PubChem and ChEMBL — millions of drugs and compounds • Crystallography Open Database — small-molecule crystals • NCI/CADD resolver — type a chemical name and get a 3D model Every source is free and needs no API key. You can also open your own .pdb and .cif files. WAYS TO SEE IT • Five representations: wireframe, ball-and-stick, space-filling (CPK), cartoon/ribbon, and a smooth molecular surface • Color by element, chain, secondary structure, rainbow, or AlphaFold confidence (pLDDT) • Biological assemblies: rebuild an entire icosahedral virus capsid from a few deposited chains • NMR ensembles: overlay every model in the bundle to watch a protein flex • Automatic secondary-structure detection MADE FOR TOUCH • Rotate, pinch-zoom, and pan with smooth native rendering • Tap any atom to see its element, residue, and chain • Recently viewed structures are cached, so they reopen instantly and work offline For students, researchers, teachers, and the simply curious. PDB Viewer makes structural biology beautiful and accessible. Structures are provided by their respective databases. PDB Viewer is independent and not affiliated with or endorsed by the RCSB PDB, EMBL-EBI, or AlphaFold.