Best PDB Viewer alternatives: apps like PDB Viewer: 3D Molecules

10+ similar apps compared and reviewed

4.0 avg rating
10 free apps
Updated November 2026

Looking for something like PDB Viewer? We've analyzed 10+ similar apps to help you find the best alternative. Each app is compared by ratings, features, and real user reviews, so you can make the right choice.

Top Alternatives to PDB Viewer

5.0(1 ratings)
Free
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Visualize, analyze, and understand complex protein structures in interactive 3D. Explore detailed annotations, compare different structures, and generate plain-language explanations of protein functions. Export your work as images, videos, or 3D models.

More apps like PDB Viewer

4
MolLab: 3D Chemistry Lab
MolLab: 3D Chemistry Lab
MolLab: 3D Chemistry Lab
3D Molecules, Atoms & Proteins
Free

Explore the fundamental building blocks of matter in interactive 3D. Visualize molecules, atoms, and even subatomic particles, build your own compounds, and test your knowledge with quizzes. Features augmented reality and export options for educational use.

3D molecule and atom explorationBuild custom moleculesPeriodic table with 118 elements
📚 Education
(1)
free
5
BioViewer
BioViewer
BioViewer
Protein/molecule visualizer
Free

Visualize 3D molecular structures from .pdb files on iOS, iPadOS, and macOS. Features smooth rendering, drag-and-drop support, and publication-quality photo exports for detailed analysis.

3D molecular structure visualizationSupports .pdb and .xyz filesDrag and drop functionality
📚 Education
(1)
free
6
MolViewApp
MolViewApp
MolViewApp
Interactive protein viewer
Free

Explore 3D molecular structures with interactive visualizations. Load PDB files locally or by ID and utilize various display modes and advanced features like electrostatic potential mapping and structural alignment. All processing is done on-device for privacy.

Load PDB files locally or by IDMultiple structure loading and visibility controlSurface electrostatic potential map
📚 Education
(2)
free
7
Molecule World
Molecule World
Molecule World
See the molecules of life
Free

Explore and analyze 3D molecular structures, connecting sequence data to their 3D forms. Visualize proteins, DNA, RNA, and small molecules with interactive tools for scientists, educators, and students.

3D molecular visualizationSequence and structure comparisonExperimental and computational structure support
📚 Education
(4)
free with in-app purchases
8
Atomizer AR: Quantum Chemistry
Atomizer AR: Quantum Chemistry
Atomizer AR: Quantum Chemistry
3D Atomic & Molecular Orbitals
Free

Explore atomic and molecular orbitals in 3D, visualize electron density, and step into augmented reality to see molecules at real-world scale. Includes tools for chemical formula calculation, equation balancing, and stoichiometry.

3D atomic and molecular orbital visualizationAugmented reality (AR) molecule placementCloud-based molecular orbital calculations
📚 Education
(3)
freemium
9
iMolview Lite
iMolview Lite
iMolview Lite
by Molsoft
Free

Explore 3D models of biological molecules like proteins and DNA from public databases. Visualize and customize molecular structures with various representations and coloring schemes. Analyze interactions and view your own structure files.

3D protein and DNA structure viewingDrug molecule visualizationCustomizable molecular representations
📚 Education
(5)
free
10
WebMO Molecule Editor
WebMO Molecule Editor
WebMO Molecule Editor
Draw, Calculate, Visualize
Free

Create and explore 3D molecular structures, visualize chemical properties, and access extensive chemical databases. This tool is ideal for students and educators needing on-the-go access to molecular information and computational chemistry resources.

3D molecular editorStructure optimizationOrbital and symmetry visualization
📚 Education
(40)
free with in-app purchases