Best Molecular Modeling App

183+ iOS apps curated and reviewed

3.8 avg rating
17 free apps
Updated June 2026

The best molecular modeling app apps on iPhone average 3.8β˜… across 183+ titles β€” we've ranked them by what real users actually keep on their phones. Updated June 2026.

Top Picks for Molecular Modeling App

Molecules#1

Molecules by Sunset Lake Software

Editor's Choice
πŸ“š Education
3.6😐(166 ratings)
Free
Molecules screenshot 1
Molecules screenshot 2
Molecules screenshot 3
Molecules screenshot 4
Molecules screenshot 5

View and manipulate 3D molecular structures using finger gestures. Rotate, zoom, and pan molecules in ball-and-stick or spacefilling modes. Store and load structures for later viewing, and download custom molecules from various sources. Experience hands-on chemistry exploration now!

What We Love

  • πŸš€ Fast and responsive
  • πŸ‘ Useful for visualizing molecules
  • πŸ‘ Great for teaching chemistry
  • πŸ‘ Excellent for biochemistry students

Room to Improve

  • πŸ› Crashes when downloading new molecules
  • πŸ› Compatibility issues with newer iOS devices
  • πŸ› Limited functionality, missing key features
The Elements by Theodore Gray#3

The Elements by Theodore Gray by NatureGuides Ltd.

Explore the Periodic Table
Worth Considering
πŸ“š Education
4.6😊(118 ratings)
$9.99
The Elements by Theodore Gray screenshot 1
The Elements by Theodore Gray screenshot 2
The Elements by Theodore Gray screenshot 3
The Elements by Theodore Gray screenshot 4
The Elements by Theodore Gray screenshot 5

Explore the world of elements with a visually stunning app that delves into the building blocks of the universe, offering in-depth information on each element along with 3D images and translations in multiple languages. Experience a new perspective on the periodic table with compelling stories, fun facts, and interactive features.

What We Love

  • πŸ’Ž Stunning visuals and 3D animations
  • πŸ“š Comprehensive information on elements
  • 🎨 Engaging and humorous writing style
  • 🏫 Excellent educational tool for all ages

Room to Improve

  • πŸ” Difficult to navigate and find specific elements
  • πŸ”Œ Massive file size takes up a lot of storage
  • πŸ› Frequent crashes and stability issues

More Molecular Modeling App apps to explore

4
Molecular Model Simulator
Molecular Model Simulator
Molecular Model Simulator
Molecules 3D Simulation
Free
πŸ”§ Utilities
(0)
5
Elemental
Elemental
Elemental
by Dotmatics Limited
Free

The application is a free chemistry sketch utility that allows users to draw chemical structures, calculate cheminformatics properties, share molecules on social media, and interact with files from various sources. The app supports a range of features, including sketching chemical reactions, accessing a built-in periodic table, and emailing structures with additional information. Download the app to start exploring the world of chemistry.

πŸ“Š Productivity
(18)
6
Mobile Molecular DataSheet
Mobile Molecular DataSheet
Mobile Molecular DataSheet
by Molecular Materials Informatics, Inc.
Free

This application allows users to view and edit chemical structure diagrams on their mobile devices, utilizing a unique and innovative touchscreen-optimized sketcher to quickly draw professional-quality molecular structures. It enables organization, sharing, and customization of molecular data, making it an ideal tool for scientists and students on-the-go.

πŸ“Š Productivity
(6)
7
Molecules by Theodore Gray
Molecules by Theodore Gray
Molecules by Theodore Gray
by NatureGuides Ltd.
$9.99

Explore the fascinating world of molecules with an interactive app that lets you touch, stretch, and twist hundreds of molecules, revealing their behavior and structure through scientifically accurate simulations. Dive into a comprehensive book, interactive videos, and rotatable 3D models to gain a deeper understanding of the building blocks of our world.

πŸ“š Education
(28)
8
Molecular Models - 3D
Molecular Models - 3D
Molecular Models - 3D
by Krishna Raj Salim
Free
πŸ“š Education
(0)
9
Aktiv Learning
Aktiv Learning
Aktiv Learning
Chemistry & Math
Free

Discover a cutting-edge Chemistry learning app tailored for students of all levels. Explore interactive lessons, quizzes, and study materials to master complex concepts easily and efficiently. Start your journey to academic excellence today!

πŸ“š Education
(183)
10
Gloop FREE
Gloop FREE
Gloop FREE
by RunSwimFly
Free

Explore a mesmerizing interactive experience where virtual molecules collide and react, creating a dynamic and visually captivating display. Watch as the gloop transforms with heat and manipulation, offering a unique way to create and shape fluid forms. Try out this app to witness the magic of molecular movement and create your own immersive art.

🎬 Entertainment
(58)
11
HudsonAlpha iCell
HudsonAlpha iCell
HudsonAlpha iCell
by HudsonAlpha Institute for Biotechnology
Free

Explore a 3D view inside animal, plant, and bacteria cells with detailed descriptions of organelles using this educational application. Interact by tapping to zoom in, rotating for different perspectives, and learning about cell biology.

πŸ“š Education
(292)
12
3D Molecules View&Edit Lite
3D Molecules View&Edit Lite
3D Molecules View&Edit Lite
by Virtual Space OOO
Free

This free 3D molecule builder and viewer allows users to open, view, and edit molecules in various formats, with features such as building models, visualizing different styles, and optimizing bond angles. Try it out to create and test your own molecular models, and explore its tutorial to get started with building and editing molecules.

πŸ“š Education
(9)
13
MoleculAR
MoleculAR
MoleculAR
Learn Molecular Geometry!
Free

This educational augmented reality app helps students learn molecular geometry and visualize complex molecules in a fun and interactive way. By printing a QR code and using the app, students can explore and interact with 3D molecules, making it easier to understand chemistry concepts.

πŸ“š Education
(0)
14
MEL Science: a science lab app
MEL Science: a science lab app
MEL Science: a science lab app
by MEL Science Limited
Free

This science lab app allows users to conduct real experiments, play science games, and learn through interactive activities, making it perfect for homeschooling, classroom learning, or supplementing science kits. Experiment, play, and learn with guidance from the app, and test your knowledge with quizzes at the end of each experiment.

πŸ“š Education
(85)
15
Peptide Calculator App
Peptide Calculator App
Peptide Calculator App
Pepcalc Compound & Dosage
Free

Calculate the molecular weight and other properties of peptides with our advanced Peptide Calculator App. Easily input peptide sequences and get detailed analyses for research and experimentation. Download now to streamline your peptide analysis process.

πŸ₯ Medical
(469)
16
WebMO Molecule Editor
WebMO Molecule Editor
WebMO Molecule Editor
Draw, Calculate, Visualize
Free

This application allows users to build, view, and calculate molecular structures in 3-D, access external databases for chemical information, and utilize state-of-the-art computational chemistry programs. It is ideal for students and faculty to visualize molecular properties, optimize structures, and perform calculations on-the-go, and start exploring molecular structures and calculations now.

πŸ“š Education
(40)
17
Happy Atoms
Happy Atoms
Happy Atoms
by Schell Games
Free

Happy Atoms is an interactive learning tool that combines a digital app with a physical modeling set to teach chemistry in a hands-on way, targeting students from 4th grade to college. Discover the world of molecules, explore bonding forces, experiment with element combinations, and understand molecular structure and properties. Get the Happy Atoms modeling set at www.happyatoms.com and educational retailers to revolutionize your chemistry learning experience!

πŸ“š Education
(132)
18
Pepty - The Peptide App
Pepty - The Peptide App
Pepty - The Peptide App
by qlabs LLC
Free
πŸ’ͺ Health & Fitness
(26)
19
Sketch 3D
Sketch 3D
Sketch 3D
Design 3D Model and Animations
$2.99
🎨 Graphics & Design
(444)
20
Mirage - molecular geometry
Mirage - molecular geometry
Mirage - molecular geometry
by chardine marc
Free
πŸ“š Education
(3)